27Wide Open Road » by VetinariVimesy John wants to get back to Pegasus. Too bad everyone seems determined to stop him. Between the IOA, the brass, & general idiocy it looks like Atlantis is stuck on Earth. At least there's stuff going on at the SGC to keep him occupied, right? A conspiracy against the Tau'ri unfurls. Attacks on multiple fronts; kidnapping, invasion, piracy, a bomb. Amidst the chaos, who's the target?
T, English, Suspense & Adventure, chapters: 8, words: 130k+, favs: 15, follows: 28, updated: 45m published: 11/19/2019, John S.
92Restoration » by SuperMom1 John is heading back to Earth for rehabilitation after the shocking injuries he received in the story "Intensity." He is not happy or impressed when he finds out that he will be staying with his brother Dave. Very soon he is wanted for his unique ability's and he desperately needs help from his friends from Atlantis and the SGC. A sequel to "Intensity".
T, English, Hurt/Comfort & Friendship, chapters: 17, words: 74k+, favs: 13, follows: 20, updated: 6h published: 6/10, John S., Teyla E., David S./Sheppard
20The Gang Saves the City » by Obsessive Explosion The people of Atlantis are woken up by a devastating explosion, and they soon realize that not only has their entire food supply been taken out, but the Gate is broken and Rodney is badly injured. A mysterious enemy has infiltrated Atlantis, and it is up to John and his team to stop him before it's too late.
T, English, Hurt/Comfort & Suspense, chapters: 15, words: 57k+, favs: 6, follows: 10, updated: 7h published: 6/24, Rodney M., John S., Teyla E., Ronon D.
116Drž Se, Miláčku » by Almedha [ENGLISH] A what-if story around the mysterious recipient of Zelenka's Letter from Pegasus. His fifteen-year-old daughter has been trying to get in touch for almost half a year now. (More slice-of-life than anything but expect some angst, dramatics, humor, romance, and adventure. Very little plot, and very, very long.)
T, English, Family & Drama, chapters: 113, words: 317k+, favs: 34, follows: 60, updated: 9h published: 5/27/2016, Elizabeth W., Rodney M., Radek Z.
4The Pilot and The Athosian » by Thoseeyesoh Perhaps carrying an injured and unconscious Teyla into the Monastery had been a bad idea for them both but there was no choice in the matter. Mainly Shep Whump ahead but Teyla whump too. Mainly John and Teyla but whole Team will be there.
T, English, Hurt/Comfort, chapters: 3, words: 5k+, favs: 3, follows: 6, updated: 12h published: 7/11, John S., Teyla E.
67 Stargate Atlantis: Earth and Sky » by Jael Rainer AU from Enemy At The Gate. Returning to Pegasus was never going to be easy. With the Wraith still a threat in that galaxy, Homeworld Defense in disarray from the battle, and Atlantis in need of major repairs, is leaving even possible? Or is Earth once again it's home? And what of the aliens that call the city home? Will life and love find a way? Under revision, will be merging.
T, English, Sci-Fi & Romance, chapters: 14, words: 45k+, favs: 69, follows: 117, updated: 7/13 published: 1/25/2015, [Ronon D., OC] [John S., Teyla E.]
8The Wayfarers' Army » by helloitea After gating back to Earth, John is arrested, court-martialed and thrown in prison for the death of Colonel Sumner. Rodney, fighting against the unjust punishment, breaks Sheppard free. They return to Pegasus, fugitives of Earth and Atlantis, and try to figure out what their life is now and what they are to each other. A remix of ami ven's 'On The Run' series. Slash.
T, English, Drama & Adventure, chapters: 3, words: 9k+, favs: 2, follows: 5, updated: 7/13 published: 5/18/2015, [John S., Rodney M.]
12Beamed Up » by Zoja "Colonel… We lost Doctor Weir on the replicator planet. Can you lock on her locator beacon and beam her up?" What if Carter managed to get Elizabeth to the Apollo before the replicators made it impossible?
T, English, Angst & Romance, chapters: 3, words: 8k+, favs: 10, follows: 13, updated: 7/12 published: 8/19/2019, [John S., Elizabeth W.] Rodney M., S. Carter/Sam
3 Purple Fruit by Steph7085 Purple fruit, table dancing Rodney and inebriated John. Elizabeth will certainly have her hands full.
K+, English, Humor & Romance, words: 2k+, favs: 1, 7/10, [Elizabeth W., John S.] Rodney M.
44End of Days » by Vana1970 When Ancient tech causes a problem which turns into a disaster for all of Atlantis. who will live and who will perish.
T, English, Drama & Hurt/Comfort, chapters: 17, words: 44k+, favs: 3, follows: 15, updated: 7/9 published: 3/1, Rodney M., John S., Teyla E., Ronon D.
11The Electus Series Part 3: Into Darkness » by Hannah554 AU. The war continues as a new enemy emerges, the prophesy is far from complete and the stakes are only getting higher. John/Elizabeth, Ronon/Teyla, Carson/Laura.
T, English, Romance & Drama, chapters: 7, words: 21k+, favs: 1, follows: 2, updated: 7/9 published: 6/15, Elizabeth W., John S., Teyla E., Ronon D.
100Of Captain's and Major's » by AegisEterna Cpt. Alice Riley is a member of SG4, before she is given the opportunity to join the Atlantis expedition, where she meets Major John Sheppard. This story is an -almost- episode by episode account of Riley's time in Atlantis. The idea is based on if another female member had been apart of Sheppard's team. Sheppard/OC pairing, but it will be a long-burn story, so stick with it.
T, English, Romance & Adventure, chapters: 41, words: 316k+, favs: 63, follows: 81, updated: 7/9 published: 1/27/2019, [John S., OC]
4Corporeality » by rachbeall Is it real or isn't it? Truths must be faced before Atlantis can reach its TRUE potential. This story was written for my friend Callie, who insists that others would like it, too...so here we are. ***REVISED AND UPDATED!***
T, English, Adventure, chapters: 8, words: 8k+, favs: 2, follows: 7, updated: 7/8 published: 8/3/2009, Elizabeth W., John S., Teyla E., Ronon D.
31 Take My Hand » by Thoseeyesoh John Sheppard and Teyla are marooned on a cliff in a planet with extreme weather conditions. Whump ahead. My first fic... NOW COMPLETE!
K+, English, Hurt/Comfort & Friendship, chapters: 8, words: 13k+, favs: 7, follows: 6, updated: 7/7 published: 6/29, Rodney M., John S., Teyla E., Ronon D.
78The Guardian of Atlantis » by HuuskerDu The Guardian was left behind to protect the city until her people returned. After waiting for millennia she finally despaired, only to be re-awakened unexpectedly by strange humans from Earth who had shockingly interbred with her own race. Upset and confused, she takes control of the city from the humans as she plans her revenge against the Wraith. AU starting at ep 4.
T, English, Sci-Fi & Romance, chapters: 27, words: 234k+, favs: 97, follows: 125, updated: 7/3 published: 11/12/2018, [Rodney M., OC] Elizabeth W., John S.
Reborn Into Stargate » by FlashyAli Well... I was just informed that I had died. Then I was told that I have been chosen to be reborn. A floating panel with questions on who I want to be and where I want to be reborn pops into existence. And so, I chose the Stargate franchise. Lets hope that I chose wisely.
T, English, Sci-Fi, chapters: 7, words: 11k+, favs: 5, follows: 9, 7/3, OC
Stargate Atlantis: Lantean Resurrection » by FlashyAli This is the tale of Ila Ultum, a Lantean that got sent 10,000 years into the future, escaping from the Wraith that were at war with the Lanteans. Join him on his journey where he meets the Atlantis Expedition, takes the fight to the Wraith and keeps the legacy of his people alive!
K, English, Sci-Fi, chapters: 5, words: 8k+, favs: 3, follows: 2, 7/3, Elizabeth W., Rodney M., John S., OC
59 All For One » by LadyShelley When an off-world mission goes sideways, Rodney is forced into a position that may destroy the trust he's been rebuilding with Sheppard, and John finally accepts that 'no one left behind rule' he put in place is there as much for him as it is for his team. Post episode s02e08 Conversion. (Part 7 of Team Rebuilding series)
T, English, Hurt/Comfort & Adventure, chapters: 9, words: 59k+, favs: 13, follows: 8, updated: 6/28 published: 6/21, Rodney M., John S., Teyla E., Ronon D.
161 Azure » by Amelia E. Adler Continuation of Midnight Blue. Alice Boyd, now a captain in the U.S. Air Force, joins the Atlantis expedition, something she did not want but felt her duty to accept. Finding herself in the midst of a full-blown war with the Wraith, she will have to overcome her fears, make difficult decisions, and do many things she is not prepared nor trained to do. OC with no AU - post season 5.
T, English, Sci-Fi & Adventure, chapters: 41, words: 296k+, favs: 75, follows: 110, updated: 6/27 published: 4/30/2017
129Understudy » by Cheryl W "Vegas" Universe: Police Detective John Sheppard joins the Atlantis team, but thinks it's not him they really want, it's the other John, the hero John, Ronon's BFF, McKay's idol. Figures that, the sooner they realize he's not him, the better off they'll all be. No Slash.
T, English, Drama & Friendship, chapters: 12, words: 49k+, favs: 22, follows: 41, updated: 6/27 published: 6/23/2019, Rodney M., John S., Teyla E., Ronon D.
12Stargate: Arcadia » by here4the3food For ten millennia, the Ancient city of Arcadia has slumbered. As the United Kingdom steps into the intergalactic stage on its own, they come to discover a once great power in the Pegasus Galaxy. Settling in is just one part of the adventure, however. Politics, enemies and discoveries await the Pegasus branch of the United Kingdom Expeditionary Service. Rated M for future themes.
T, English, Adventure & Sci-Fi, chapters: 11, words: 48k+, favs: 6, follows: 9, updated: 6/25 published: 5/12, OC
16Behind The Curtains » by Zoja A series of missing scenes and vignettes for Stargate: Atlantis. Canon compliant, although with rather clear hints of John/Elizabeth.
T, English, Romance, chapters: 4, words: 6k+, favs: 4, follows: 6, updated: 6/25 published: 4/16/2016, Elizabeth W., John S.
27 The Course of True Love » by Salchat 'The course of true love never did run smooth,' and especially not if there's a Wraith in your midst. Doubt and suspicion lead to misunderstandings and mayhem in this romantic drama in five acts! Rodney/Jennifer, Ronon/Amelia, Teyla/Kanaan, John/Teyla
K+, English, Romance & Drama, chapters: 5, words: 23k+, favs: 3, follows: 6, updated: 6/24 published: 6/21, Rodney M., John S., Teyla E., Ronon D.
14 Rodney Mckay: Anti-Drug Advocate » by Obsessive Explosion John is exploring Atlantis when he accidentally ingests some hallucinogenic algae. Terrified and alone, he has to rely on Rodney to rescue him and bring him to safety.
K+, English, Hurt/Comfort & Friendship, chapters: 4, words: 14k+, favs: 5, follows: 7, updated: 6/23 published: 6/20, Rodney M., John S.
36 The Gang Goes Gladiator » by Obsessive Explosion The team struggles to get back to Atlantis with a desperately-injured John after Ronon participates in a Gladiator-style fight that goes wrong.
T, English, Hurt/Comfort & Adventure, chapters: 11, words: 42k+, favs: 7, follows: 16, updated: 6/18 published: 5/26, Rodney M., John S., Teyla E., Ronon D.