169Secrets » by Redtail53 "In all secrets there is a kind of guilt ... for what good end they may be set to serve. Secrecy means evasion and evasion means a problem to the moral kind." – Gilbert Parker. John Sheppard realized his life was never going to be the same... and he wasn't sure how he felt about it. Season 3 sometime between Real World and Common Ground.
Stargate: Atlantis, T, English, Drama & Hurt/Comfort, chapters: 21, words: 46k+, favs: 67, follows: 158, updated: 9/28/2020 published: 2/19/2005, John S.
365 He's Not Psychic, He's My Brother » by Kipling Nori John receives an urgent letter from his half brother and he decides to go visit him. Whether or not that is exactly a good thing, John has yet to determine. Atlantis Psych crossover
Stargate: Atlantis & Psych, K+, English, Humor, chapters: 17, words: 37k+, favs: 267, follows: 306, updated: 3/12/2012 published: 7/29/2007
383 A Time to Heal » by PyroDragon2006 John thought it was over, but when a new presidential advisor and an old enemy both show up on Atlantis, the wounds run deep. Set after Common Ground, so SPOILERS! Now COMPLETE!
Stargate: Atlantis, T, English, Drama & Adventure, chapters: 18, words: 53k+, favs: 195, follows: 132, updated: 8/30/2009 published: 12/14/2006, John S., Rodney M.
25The Awakening » by SaraBrianne A sequal to the Midnighters Trilogy: New Midnighters are cropping up everywhere, but when Seers begin dying and Mindcasters turn up missing the Midnighters face their toughest challenge yet. Written by the Sara half of SaraBrianne.
Midnighters, T, English, Adventure & Supernatural, chapters: 10, words: 24k+, favs: 17, follows: 20, updated: 2/26/2009 published: 10/24/2006
26Fatman & Ronon » by The Watch Stander McKay's eating habits catch up to him and the team has to step in. Humor with all the team. Chapter Four - Mckay can always use a little help from a friend
Stargate: Atlantis, K, English, Humor, chapters: 4, words: 6k+, favs: 13, follows: 11, updated: 4/29/2008 published: 11/2/2007, Rodney M.
135 In the Arms of Angels » by cause.A.scene Tag to Miller's Crossing, then some. - When Sheppard travels down to earth for a few days and finds Jeannie waiting for him, they end up in a sticky situation. No pairings, Spoilers for Miller's Crossing. More details inside. COMPLETE
Stargate: Atlantis, K, English, Drama & Hurt/Comfort, chapters: 6, words: 24k+, favs: 65, follows: 46, updated: 3/27/2008 published: 2/1/2008, John S.
85Here's Looking at You, Kid » by Thaumaturgy A solar flare sends John back in time, and only one person is capable of sending him back. Unfortunately, he's currently 16 years old, and as always, Rodney has a lot of issues to work out…
Stargate: Atlantis, K, English, chapters: 4, words: 7k+, favs: 40, follows: 91, updated: 3/1/2008 published: 8/14/2007, John S., Rodney M.
870 Castles in the Sky » by Stealth Dragon Sheppard is captured and to be a slave to the wraith. It becomes more than a matter of survival, but also a matter of keeping his sanity.
Stargate: Atlantis, T, English, Hurt/Comfort & Angst, chapters: 31, words: 138k+, favs: 206, follows: 87, updated: 2/8/2008 published: 9/27/2007, John S.
25 Lost » by Pilgrim Soul After a tough day Lt Col Rob Parker is looking forward a relaxing Friday evening but his night in doesn't go as planned when an old air force buddy turns up out of the blue. Originally posted on LJ in April 2007. OC POV Shep-centric
Stargate: Atlantis, T, English, Angst & Hurt/Comfort, chapters: 2, words: 8k+, favs: 47, follows: 5, 2/7/2008, John S.
812 Going Home » by Titan5 John is sent back to Earth to recover from his latest set of injuries and decides to visit his father. He is very surprised at the homecoming he receives.
Stargate: Atlantis, T, English, Hurt/Comfort & Angst, chapters: 20, words: 95k+, favs: 390, follows: 160, updated: 11/24/2007 published: 10/8/2007
69 One Small Ride » by cflat Lt. Ford's relatives contact NCIS in hopes that they can find him. NCIS xover with Stargate: Atlantis.
NCIS & Stargate: Atlantis, K, English, Sci-Fi, chapters: 4, words: 6k+, favs: 51, follows: 128, updated: 11/24/2007 published: 3/15/2007
25 The End is Nigh » by Reefgirl When Jack returns after the year that never was he doesn't get the warm welcome he was expecting, instead he finds the team breaking up. Crossover with SG1 and Stargate Atlantis. Epilogue: In which Jack says goodbye to the team and goes back to the stars
Torchwood, T, English, Angst & Friendship, chapters: 6, words: 10k+, favs: 10, follows: 20, updated: 11/19/2007 published: 10/30/2007
52Correspondence » by Not A Muggle A letter he never planned on sending home leads to mended fences, secrets revealed, and so much more. Rating Just to be safe. Mild shep whump.
Stargate: Atlantis, T, English, chapters: 7, words: 13k+, favs: 10, follows: 44, updated: 11/16/2007 published: 10/19/2007, John S.
127 A Second Too Late » by Alipeeps AU Shepwhumpy tag fic to Season 4 episode Doppelganger. WARNING! SPOILERS FOR PLOT OF DOPPELGANGER! My take on what might have happened if a certain scene had ended differently.. NOW COMPLETE.
Stargate: Atlantis, T, English, Hurt/Comfort & Drama, chapters: 6, words: 16k+, favs: 90, follows: 42, updated: 11/15/2007 published: 10/11/2007, John S.
4 It's Him by Reefgirl Jack told the Doctor that he'd been back to Rose's estate to see her. One time he sees someone else who becomes important to him. JackRoseShareenIanto
Doctor Who, K+, English, Friendship, words: 691, favs: 4, follows: 3, 10/31/2007
91Admitted » by obsessed1 Sheppard ends up in hospital on earth with no sign of his team
Stargate: Atlantis, K, English, chapters: 4, words: 11k+, favs: 71, follows: 35, updated: 10/29/2007 published: 10/18/2007, John S.
37Doctors, Blue Boxes and Immortals, Oh My! » by Reefgirl While on a rescure mission, Sheppard and Co meet the Tardis occupants. Dr Who Crossover. Ch 4 is up
Stargate: Atlantis, T, English, Drama & Humor, chapters: 4, words: 6k+, favs: 16, follows: 28, updated: 10/23/2007 published: 9/6/2007
5 John Sheppard's Not So Good Trip To Earth by MacGateFan Sheppard takes a trip to Earth to deal with the events of Phantoms, but can Sheppard really go somewhere and not save someone in trouble? Crossover with SG1, Daniel makes an appearance!
Stargate: Atlantis, K+, English, words: 1k+, favs: 22, follows: 5, 10/5/2007, John S.
44 Pieces of the Whole by Kristen999 The team are captured and learn that there are two forms of torture, not knowing which one is worse. Lots of Team emotional whump—Shep whump.
Stargate: Atlantis, T, English, Hurt/Comfort & Angst, words: 13k+, favs: 94, follows: 8, 9/15/2007, John S., Rodney M.
105Inebriation » by obsessed1 Summary: It was supposed to be simple so how did their mission end with a very drunk, whumped Colonel. The link for this seems to be a bit touchy so if it doesn't work you can find this over at my livejournal in my authors profile.
Stargate: Atlantis, K+, English, Hurt/Comfort & Humor, chapters: 9, words: 17k+, favs: 56, follows: 24, updated: 8/28/2007 published: 8/6/2007, John S., Rodney M.
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